Season 3

01 No Man's Land (2) Episode 113th July 2006 The team desperately attempts to stop two Wraith hive ships from reaching Earth. Sheppard must rely on an old foe to rescue McKay and Ronon. 02 Misbegotten (3) Episode 220th July 2006 The Atlantis team must decide the fate of a colony of Wraith they have turned into humans. Dr. Weir must defend her leadership when she is evaluated by the I.O.A. 03 Irresistible Episode 327th July 2006 Sheppard's team meets an obnoxious man who is adored by all thanks to a secret that he carries -- and who has an unexpected effect on them. 04 Sateda Episode 43rd August 2006 Ronon Dex is captured by the Wraith and returned to his homeworld, where he is haunted by his past as he is forced to once again become their prey. 05 Progeny Episode 510th August 2006 Weir and the team visit an advanced civilization that split off from the Lanteans thousands of years ago, but discover that they may not have left Atlantis in peace. 06 The Real World Episode 617th August 2006 Elizabeth Weir wakes up in a mental institution, where she is told that the expedition to Atlantis and the Stargate are figments of her imagination. 07 Common Ground Episode 724th August 2006 Colonel Sheppard finds himself the prisoner of a Genii commander, along with a desperately hungry Wraith who has been separated from his hive. 08 McKay and Mrs. Miller Episode 87th September 2006 Rodney McKay is reunited with his estranged sister back on Earth, who has given up a brilliant career as a scientist to raise a family. 09 Phantoms Episode 914th September 2006 Sheppard and Ronon are influenced by a mind-altering device created by the Wraith while on a mission to rescue a lost team. 10 The Return (1) Episode 1021st September 2006 The Atlantis expedition is stunned to learn that a ship full of Ancients is returning to reclaim their lost city. 11 The Return (2) Episode 1119th November 2006 The Atlantis team goes against orders to try and save Atlantis from Replicator control -- and to rescue General O'Neill and Richard Woolsey, who are trapped in the occupied city. 12 Echoes Episode 1226th November 2006 The inhabitants of Atlantis begin to suffer ill effects when the planet's whale population begins migrating to the island city, bringing an unexpected harbinger of doom. 13 Irresponsible Episode 133rd December 2006 The team finds Lucius Lavin manipulating the people of another hapless planet, using Ancient technology to pose as an invincible hero. 14 Tao of Rodney Episode 1410th December 2006 After an Ancient device gives Rodney superhuman powers, his enhanced brilliance is checked only by his impending death -- unless he can learn how to ascend. 15 The Game Episode 1517th December 2006 Sheppard and McKay discover that their competitive video game has been controlling a planet of real people, who now stand on the brink of war. 16 The Ark Episode 167th January 2007 The team discovers the last of a civilization in suspended animation, whose survival is at risk when their station is critically damaged. 17 Sunday Episode 1711th January 2007 The team tries to relax during a mandatory day off, until an explosion leaves three people dead -- and reveals that one scientist is a walking time bomb. 18 Submersion Episode 1814th January 2007 The team discovers an Ancient drilling station deep beneath the surface of the ocean, only to find that a Wraith queen is still alive there. 19 Vengeance Episode 1928th January 2007 The Atlantis team investigates the disappearance of one of their allies, only to find an old enemy engineering a race of powerful monsters. 20 First Strike (1) Episode 204th February 2007 An unstoppable energy weapon leaves Atlantis under siege after Earth launches a preemptive attack against a very powerful enemy's homeworld.